Package: tripsAndDipR 0.2.0

Thomas Delomas

tripsAndDipR: Inference of Ploidy from Sequencing Data

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to infer ploidy. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithms, please see Delomas (2019) <doi:10.1111/1755-0998.13073> and Delomas et al. (2021) <doi:10.1111/1755-0998.13431>.

Authors:Thomas Delomas [aut, cre]

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tripsAndDipR/json (API)

# Install 'tripsAndDipR' in R:
install.packages('tripsAndDipR', repos = c('https://delomast.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/delomast/tripsanddipr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

4 exports 3 stars 0.92 score 1 dependencies 4 scripts 113 downloads

Last updated 1 years agofrom:291d186426. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 10 2024
R-4.5-win-x86_64WARNINGSep 10 2024
R-4.5-linux-x86_64WARNINGSep 10 2024
R-4.4-win-x86_64WARNINGSep 10 2024
R-4.4-mac-x86_64WARNINGSep 10 2024
R-4.4-mac-aarch64WARNINGSep 10 2024
R-4.3-win-x86_64WARNINGSep 10 2024
R-4.3-mac-x86_64WARNINGSep 10 2024
R-4.3-mac-aarch64WARNINGSep 10 2024

Exports:funkyPloidgenoPropsrPloidySamplestripsAndDip

Dependencies:Rcpp

Ploidy Inference

Thomas Delomas

Rendered fromploidy_inference_general.Rmdusingknitr::rmarkdownon Sep 10 2024.

Last update: 2020-12-29
Started: 2020-05-13