Package: tripsAndDipR 0.2.0

Thomas Delomas

tripsAndDipR: Inference of Ploidy from Sequencing Data

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to infer ploidy. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithms, please see Delomas (2019) <doi:10.1111/1755-0998.13073> and Delomas et al. (2021) <doi:10.1111/1755-0998.13431>.

Authors:Thomas Delomas [aut, cre]

tripsAndDipR_0.2.0.tar.gz
tripsAndDipR_0.2.0.zip(r-4.7)tripsAndDipR_0.2.0.zip(r-4.6)tripsAndDipR_0.2.0.zip(r-4.5)
tripsAndDipR_0.2.0.tgz(r-4.6-x86_64)tripsAndDipR_0.2.0.tgz(r-4.6-arm64)tripsAndDipR_0.2.0.tgz(r-4.5-x86_64)tripsAndDipR_0.2.0.tgz(r-4.5-arm64)
tripsAndDipR_0.2.0.tar.gz(r-4.7-arm64)tripsAndDipR_0.2.0.tar.gz(r-4.7-x86_64)tripsAndDipR_0.2.0.tar.gz(r-4.6-arm64)tripsAndDipR_0.2.0.tar.gz(r-4.6-x86_64)
tripsAndDipR_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tripsAndDipR/json (API)

# Install 'tripsAndDipR' in R:
install.packages('tripsAndDipR', repos = c('https://delomast.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/delomast/tripsanddipr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

4.18 score 3 stars 4 scripts 111 downloads 4 exports 1 dependencies

Last updated from:291d186426. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING129
linux-devel-x86_64WARNING111
source / vignettesOK173
linux-release-arm64WARNING125
linux-release-x86_64WARNING115
macos-release-arm64WARNING178
macos-release-x86_64WARNING250
macos-oldrel-arm64WARNING136
macos-oldrel-x86_64WARNING221
windows-develWARNING122
windows-releaseWARNING108
windows-oldrelWARNING104
wasm-releaseOK103

Exports:funkyPloidgenoPropsrPloidySamplestripsAndDip

Dependencies:Rcpp

Ploidy Inference

Thomas Delomas

Rendered fromploidy_inference_general.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2020-12-29
Started: 2020-05-13