Package: tripsAndDipR 0.2.0

Thomas Delomas

tripsAndDipR: Inference of Ploidy from Sequencing Data

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to infer ploidy. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithms, please see Delomas (2019) <doi:10.1111/1755-0998.13073> and Delomas et al. (2021) <doi:10.1111/1755-0998.13431>.

Authors:Thomas Delomas [aut, cre]

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tripsAndDipR.pdf |tripsAndDipR.html✨
tripsAndDipR/json (API)

# Install 'tripsAndDipR' in R:
install.packages('tripsAndDipR', repos = c('https://delomast.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/delomast/tripsanddipr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

cpp

4.18 score 3 stars 4 scripts 88 downloads 4 exports 1 dependencies

Last updated 2 years agofrom:291d186426. Checks:1 OK, 10 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 07 2025
R-4.5-win-x86_64WARNINGFeb 07 2025
R-4.5-mac-x86_64WARNINGFeb 07 2025
R-4.5-mac-aarch64WARNINGFeb 07 2025
R-4.5-linux-x86_64WARNINGFeb 07 2025
R-4.4-win-x86_64WARNINGFeb 07 2025
R-4.4-mac-x86_64WARNINGFeb 07 2025
R-4.4-mac-aarch64WARNINGFeb 07 2025
R-4.3-win-x86_64WARNINGFeb 07 2025
R-4.3-mac-x86_64WARNINGFeb 07 2025
R-4.3-mac-aarch64WARNINGFeb 07 2025

Exports:funkyPloidgenoPropsrPloidySamplestripsAndDip

Dependencies:Rcpp

Ploidy Inference

Thomas Delomas

Rendered fromploidy_inference_general.Rmdusingknitr::rmarkdownon Feb 07 2025.

Last update: 2020-12-29
Started: 2020-05-13