Uses read counts for biallelic SNPs to determine ploidy
Citation for function tripsAndDip(): Delomas, T.A. 2019. Differentiating diploid and
triploid individuals using single nucleotide polymorphisms genotyped by amplicon
sequencing. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13073
Citation for functions funkyPloid() and genoProps(): Delomas, T.A., et al. 2021. Genotyping single
nucleotide polymorphisms and inferring ploidy by amplicon sequencing for polyploid,
ploidy-variable organisms. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13431
Install with:
devtools::install_github("delomast/tripsAndDipR")
To install and view the vignette:
devtools::install_github("delomast/tripsAndDipR", build_vignettes = TRUE)
browseVignettes("tripsAndDipR")